Building on x86-bm-c14.sw.ocaml.org
(from ocaml/opam:debian-unstable)
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/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
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/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q c4b7df5d3d3b3127a642526a9602738f289a8e0b"))
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/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
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/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '5.0' '5.0.0'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "5.0.0"} | "ocaml-system" {= "5.0.0"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.5.0.0 (cached)
-> installed ocaml-base-compiler.5.0.0
-> installed ocaml-config.3
-> installed ocaml.5.0.0
-> installed base-domains.base
-> installed base-nnp.base
Done.
# Run eval $(opam env --switch=5.0) to update the current shell environment
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/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [198 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-04-21-2006.57-F-2024-04-11-1406.04.pdiff [594 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-04-21-2006.57-F-2024-04-11-1406.04.pdiff [594 kB]
- Fetched 856 kB in 3s (307 kB/s)
- Reading package lists...
-
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/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"conf-rdkit.1\"\
\nopam install -vy \"conf-rdkit.1\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"conf-rdkit.1\" | grep -q '\"debian-unstable\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
Nothing to do.
[NOTE] conf-rdkit.1 is not installed.
The following actions will be performed:
=== install 1 package
- install conf-rdkit 1
The following system packages will first need to be installed:
librdkit-dev python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3-rdkit"
- debconf: delaying package configuration, since apt-utils is not installed
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- Unpacking python3-rdkit (202309.3-3+b1) ...
- Setting up media-types (10.1.0) ...
- Setting up libboost-python1.83.0 (1.83.0-2.1+b1) ...
- Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ...
- Setting up libxcb1:amd64 (1.17.0-1) ...
- Setting up libxcb1-dev:amd64 (1.17.0-1) ...
- Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
- Setting up libxcb-render0:amd64 (1.17.0-1) ...
- Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ...
- Setting up libpython3.11t64:amd64 (3.11.9-1) ...
- Setting up fonts-freefont-ttf (20211204+svn4273-2) ...
- Setting up libxcb-shm0:amd64 (1.17.0-1) ...
- Setting up rdkit-data (202309.3-3) ...
- Setting up libboost-serialization1.83.0:amd64 (1.83.0-2.1+b1) ...
- Setting up libblas3:amd64 (3.12.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-2.1+b1) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.43-5) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up libgfortran5:amd64 (14-20240330-1) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b1) ...
- Setting up libpython3-stdlib:amd64 (3.11.8-1) ...
- Setting up python3.11 (3.11.9-1) ...
- Setting up liblapack3:amd64 (3.12.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-1.1) ...
- Setting up python3 (3.11.8-1) ...
- running python rtupdate hooks for python3.11...
- running python post-rtupdate hooks for python3.11...
- Setting up libmaeparser1:amd64 (1.3.1-1+b1) ...
- Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ...
- Setting up libfontconfig1:amd64 (2.15.0-1.1) ...
- Setting up python3-pkg-resources (68.1.2-2) ...
- Setting up libcairo2:amd64 (1.18.0-3+b1) ...
- Setting up python3-numpy (1:1.26.4+ds-6) ...
- Setting up librdkit1 (202309.3-3+b1) ...
- Setting up python3-rdkit (202309.3-3+b1) ...
- Setting up librdkit-dev (202309.3-3+b1) ...
- Processing triggers for libc-bin (2.37-17) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 2/3: [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-rdkit.1)
Processing 2/3: [conf-rdkit: ./test]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./test" (CWD=/home/opam/.opam/5.0/.opam-switch/build/conf-rdkit.1)
- 2023.09.3
-> compiled conf-rdkit.1
-> installed conf-rdkit.1
Done.
# Run eval $(opam env) to update the current shell environment
2024-04-22 00:04.59 ---> saved as "aafc64996ddf5777e619fb5f9f3daf68086d2b27c465a5c3971660cf8aa9d43a"
Job succeeded
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