Building on x86-bm-c18.sw.ocaml.org
(from ocaml/opam:debian-unstable)
Unable to find image 'ocaml/opam:debian-unstable' locally
debian-unstable: Pulling from ocaml/opam
75e297398114: Pulling fs layer
75e297398114: Verifying Checksum
75e297398114: Download complete
75e297398114: Pull complete
Digest: sha256:4a898e4d9327c4ec8b00f04fe59247b309c63fa54d84a70ddc47fb36d38ec3ae
Status: Downloaded newer image for ocaml/opam:debian-unstable
2024-04-22 10:21.34 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2024-04-22 10:21.34 ---> using "65c3237f501f7c75f3828458ecf2342bc41c98aaef8c6a7fd82bf46a58cb258c" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q c4b7df5d3d3b3127a642526a9602738f289a8e0b"))
2024-04-22 10:21.34 ---> using "ffb9b2e40c546ce31dc6f75eac0fb0a372fd62901b8bb6dc1b5f51a9f2e506dd" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2024-04-22 10:21.34 ---> using "1542764b16e5f440c250016a47c8ff777b98397f0244afcaf081651842e35aeb" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '4.11' '4.11.2'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.11.2"} | "ocaml-system" {= "4.11.2"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> retrieved ocaml-base-compiler.4.11.2 (cached)
-> installed ocaml-base-compiler.4.11.2
-> installed ocaml-config.1
-> installed ocaml.4.11.2
Done.
# Run eval $(opam env --switch=4.11) to update the current shell environment
2024-04-22 10:21.34 ---> using "0a00d052d1baaf223ef2ed74935663882bc5526647883713b9e1d39f99dbe6d3" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [198 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-04-21-2006.57-F-2024-04-19-0205.06.pdiff [207 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-04-21-2006.57-F-2024-04-19-0205.06.pdiff [207 kB]
- Fetched 469 kB in 2s (194 kB/s)
- Reading package lists...
-
2024-04-22 10:21.34 ---> using "1a873944df406f0f698ce5be7f1d9b6245ff46125556e98fa30d61c73e6a56e0" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"orsvm_e1071.4.0.0\"\
\nopam install -vy \"orsvm_e1071.4.0.0\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"orsvm_e1071.4.0.0\" | grep -q '\"debian-unstable\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] orsvm_e1071.4.0.0 is not installed.
Nothing to do.
The following actions will be performed:
=== install 4 packages
- install conf-r 1.0.0 [required by orsvm_e1071]
- install dolog 6.0.0 [required by orsvm_e1071]
- install dune 3.15.0 [required by orsvm_e1071]
- install orsvm_e1071 4.0.0
The following system packages will first need to be installed:
r-base-core
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "r-base-core"
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- Adding 'diversion of /usr/bin/luit to /usr/bin/luit.x11-utils by luit'
- Adding 'diversion of /usr/share/man/man1/luit.1.gz to /usr/share/man/man1/luit.x11-utils.1.gz by luit'
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- Setting up media-types (10.1.0) ...
- Setting up libtext-iconv-perl:amd64 (1.7-8+b3) ...
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- Setting up luit (2.0.20221028-1) ...
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- Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ...
- Setting up libxpm4:amd64 (1:3.5.17-1+b1) ...
- Setting up r-doc-html (4.3.3-3) ...
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- Setting up libfont-afm-perl (1.20-4) ...
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- Setting up libdatrie1:amd64 (0.2.13-3) ...
- Setting up xdg-user-dirs (0.18-1) ...
- Setting up libxcb-render0:amd64 (1.17.0-1) ...
- Setting up libclone-perl:amd64 (0.46-1+b2) ...
- Setting up libglvnd0:amd64 (1.7.0-1) ...
- Setting up libio-stringy-perl (2.111-3) ...
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- Setting up libhtml-tagset-perl (3.24-1) ...
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- Setting up libxcb-glx0:amd64 (1.17.0-1) ...
- Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ...
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- Setting up libxcb-shape0:amd64 (1.17.0-1) ...
- Setting up x11-common (1:7.7+23) ...
- invoke-rc.d: could not determine current runlevel
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- Setting up libxxf86dga1:amd64 (2:1.1.5-1) ...
- Setting up libdeflate0:amd64 (1.20-1) ...
- Setting up perl-openssl-defaults:amd64 (7+b2) ...
- Setting up libencode-locale-perl (1.05-3) ...
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- Setting up zip (3.0-13) ...
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- Setting up libpcre2-32-0:amd64 (10.42-4+b1) ...
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- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.78.4-6) ...
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- update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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- Setting up libblas-dev:amd64 (3.12.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up libpython3-stdlib:amd64 (3.11.8-1) ...
- Setting up libbz2-dev:amd64 (1.0.8-5.1) ...
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- Setting up libxcb-dri3-0:amd64 (1.17.0-1) ...
- Setting up python3.11 (3.11.9-1) ...
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- Setting up libhttp-date-perl (6.06-1) ...
- Setting up liblapack3:amd64 (3.12.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libncurses-dev:amd64 (6.4+20240414-1) ...
- Setting up libfile-basedir-perl (0.09-2) ...
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- Setting up libpcre2-dev:amd64 (10.42-4+b1) ...
- Setting up libtirpc3t64:amd64 (1.3.4+ds-1.2) ...
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- Setting up fontconfig-config (2.15.0-1.1) ...
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- Setting up libpng-dev:amd64 (1.6.43-5) ...
- Setting up libjpeg-dev:amd64 (1:2.1.5-2+b2) ...
- Setting up libnet-http-perl (6.23-1) ...
- Setting up python3 (3.11.8-1) ...
- running python rtupdate hooks for python3.11...
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- Setting up dbus-daemon (1.14.10-4+b1) ...
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- Setting up gfortran-13-x86-64-linux-gnu (13.2.0-23) ...
- Setting up pkgconf:amd64 (1.8.1-1+b2) ...
- Setting up libthai0:amd64 (0.1.29-2) ...
- Setting up libtirpc-dev:amd64 (1.3.4+ds-1.2) ...
- Setting up libllvm17t64:amd64 (1:17.0.6-9+b2) ...
- Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ...
- Setting up gfortran-13 (13.2.0-23) ...
- Setting up dbus (1.14.10-4+b1) ...
- invoke-rc.d: could not determine current runlevel
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- Setting up shared-mime-info (2.4-4) ...
- Setting up liblapack-dev:amd64 (3.12.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up pkg-config:amd64 (1.8.1-1+b2) ...
- Setting up ucf (3.0043+nmu1) ...
- Setting up libfile-desktopentry-perl (0.22-3) ...
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- done.
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- Setting up libgbm1:amd64 (24.0.5-1) ...
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- Setting up libhtml-tree-perl (5.07-3) ...
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- Setting up libhtml-format-perl (2.16-2) ...
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- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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- Setting up libcairo2:amd64 (1.18.0-3+b1) ...
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- Setting up libnet-smtp-ssl-perl (1.04-2) ...
- Setting up libmailtools-perl (2.21-3) ...
- Setting up libxt6t64:amd64 (1:1.2.1-1.2) ...
- Setting up libhttp-daemon-perl (6.16-1) ...
- Setting up libegl1:amd64 (1.7.0-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.52.1+ds-1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.52.1+ds-1) ...
- Setting up libxmu6:amd64 (2:1.1.3-3+b2) ...
- Setting up libglx-mesa0:amd64 (24.0.5-1) ...
- Setting up libglx0:amd64 (1.7.0-1) ...
- Setting up libxaw7:amd64 (2:1.0.14-1+b2) ...
- Setting up x11-xserver-utils (7.7+10+b1) ...
- Setting up libgl1:amd64 (1.7.0-1) ...
- Setting up r-base-core (4.3.3-3+b1) ...
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- Creating config file /etc/R/Renviron with new version
- Setting up r-cran-lattice (0.22-6-1) ...
- Setting up r-cran-nlme (3.1.164-1) ...
- Setting up zutty (0.15.2.20240411+dfsg1-1) ...
- update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- Setting up r-cran-cluster (2.1.6-1) ...
- Setting up x11-utils (7.7+6+b1) ...
- Setting up r-cran-nnet (7.3-19-2) ...
- Setting up r-cran-codetools (0.2-20-1) ...
- Setting up r-cran-boot (1.3-30-1) ...
- Setting up r-base-dev (4.3.3-3) ...
- Setting up r-cran-spatial (7.3-17-1) ...
- Setting up r-cran-mass (7.3-60.0.1-1) ...
- Setting up r-cran-foreign (0.8.86-1) ...
- Setting up r-cran-matrix (1.6-5-1) ...
- Setting up r-cran-kernsmooth (2.23-22-1) ...
- Setting up r-cran-mgcv (1.9-1-1) ...
- Setting up r-cran-class (7.3-22-2) ...
- Setting up r-cran-survival (3.5-8-1) ...
- Setting up r-cran-rpart (4.1.23-1) ...
- Setting up r-recommended (4.3.3-3) ...
- Setting up liblwp-protocol-https-perl (6.14-1) ...
- Setting up libwww-perl (6.77-1) ...
- Setting up libxml-parser-perl (2.47-1+b2) ...
- Setting up libxml-twig-perl (1:3.52-3) ...
- Setting up libnet-dbus-perl (1.2.0-2+b2) ...
- Processing triggers for libc-bin (2.37-17) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
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Processing 5/12: [orsvm_e1071.4.0.0: http] [conf-r: R CMD]
-> retrieved dolog.6.0.0 (cached)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "R" "CMD" "BATCH" "check.r" (CWD=/home/opam/.opam/4.11/.opam-switch/build/conf-r.1.0.0)
-> compiled conf-r.1.0.0
Processing 5/12: [orsvm_e1071.4.0.0: http]
-> installed conf-r.1.0.0
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Processing 6/12:
-> retrieved orsvm_e1071.4.0.0 (https://github.com/UnixJunkie/orsvm-e1071/archive/v4.0.0.tar.gz)
-> retrieved dune.3.15.0 (cached)
Processing 7/12: [dune: ocaml 31]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "ocaml" "boot/bootstrap.ml" "-j" "31" (CWD=/home/opam/.opam/4.11/.opam-switch/build/dune.3.15.0)
- ocamlc -output-complete-exe -w -24 -g -o .duneboot.exe -I boot unix.cma boot/libs.ml boot/duneboot.ml
- ./.duneboot.exe -j 31
- cd _boot && /home/opam/.opam/4.11/bin/ocamlopt.opt -c -g -no-alias-deps -w -49-6 -alert -unstable -I +threads opamLocal.ml
- File "vendor/opam/src/repository/opamLocal.ml", lines 109-114, characters 46-34:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- Checksum_mismatch _
- File "vendor/opam/src/repository/opamLocal.ml", lines 170-189, characters 44-56:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- Checksum_mismatch _
- File "vendor/opam/src/repository/opamLocal.ml", lines 209-231, characters 8-44:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- Checksum_mismatch _
- cd _boot && /home/opam/.opam/4.11/bin/ocamlopt.opt -c -g -no-alias-deps -w -49-6 -alert -unstable -I +threads opamVCS.ml
- File "vendor/opam/src/repository/opamVCS.ml", lines 179-182, characters 11-40:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- Checksum_mismatch _
- cd _boot && /home/opam/.opam/4.11/bin/ocamlopt.opt -c -g -no-alias-deps -w -49-6 -alert -unstable -I +threads dune_util__Gc.ml
- File "src/dune_util/gc.ml", lines 78-95, characters 5-6:
- Warning 23: all the fields are explicitly listed in this record:
- the 'with' clause is useless.
- cd _boot && /home/opam/.opam/4.11/bin/ocamlopt.opt -c -g -no-alias-deps -w -49-6 -alert -unstable -I +threads opamDownload.ml
- File "vendor/opam/src/repository/opamDownload.ml", lines 323-361, characters 42-41:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- Checksum_mismatch _
- cd _boot && /home/opam/.opam/4.11/bin/ocamlopt.opt -c -g -no-alias-deps -w -49-6 -alert -unstable -I +threads opamRepository.ml
- File "vendor/opam/src/repository/opamRepository.ml", lines 88-90, characters 45-77:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- Checksum_mismatch _
- File "vendor/opam/src/repository/opamRepository.ml", lines 277-281, characters 38-17:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- Checksum_mismatch _
- File "vendor/opam/src/repository/opamRepository.ml", lines 423-427, characters 12-42:
- Warning 8: this pattern-matching is not exhaustive.
- Here is an example of a case that is not matched:
- (_, Checksum_mismatch _)
-
Processing 7/12: [dune: ./_boot/dune.exe build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./_boot/dune.exe" "build" "dune.install" "--release" "--profile" "dune-bootstrap" "-j" "31" (CWD=/home/opam/.opam/4.11/.opam-switch/build/dune.3.15.0)
-> compiled dune.3.15.0
-> installed dune.3.15.0
Processing 9/12: [dolog: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dolog" "-j" "31" (CWD=/home/opam/.opam/4.11/.opam-switch/build/dolog.6.0.0)
-> compiled dolog.6.0.0
-> installed dolog.6.0.0
Processing 11/12: [orsvm_e1071: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "orsvm_e1071" "-j" "31" (CWD=/home/opam/.opam/4.11/.opam-switch/build/orsvm_e1071.4.0.0)
-> compiled orsvm_e1071.4.0.0
-> installed orsvm_e1071.4.0.0
Done.
<><> orsvm_e1071.4.0.0 installed successfully <><><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('e1071', repos='http://cran.r-project.org')
install.packages('svmpath', repos='http://cran.r-project.org')
# Run eval $(opam env) to update the current shell environment
2024-04-22 10:23.01 ---> saved as "43ace46db5c975a5ed6a5cbc70db0f420c1dac638c08d1e6e5f7783bf1fa4d51"
Job succeeded
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