Building on x86-bm-5.ocamllabs.io
(from ocaml/opam:debian-unstable)
Unable to find image 'ocaml/opam:debian-unstable' locally
debian-unstable: Pulling from ocaml/opam
a6543f35db5e: Already exists
cc2950235715: Pulling fs layer
5fb07599fbb1: Pulling fs layer
5fb07599fbb1: Verifying Checksum
5fb07599fbb1: Download complete
cc2950235715: Verifying Checksum
cc2950235715: Download complete
cc2950235715: Pull complete
5fb07599fbb1: Pull complete
Digest: sha256:dfed7bff1a381ffff2cd28380e5300e2918ceefeafb3be42fb70e650cb5a5ae8
Status: Downloaded newer image for ocaml/opam:debian-unstable
2021-12-03 16:42.07 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
2021-12-03 16:42.07 ---> using "4d29eb3e0b7cd69a97ed90837671d5ca38aa41e2fb94346298af500378eca6fa" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q b1ed080260d9fb3332ffd1ed74a70b40f8d46d66"))
2021-12-03 16:42.07 ---> using "470a5139cd314c308ef6f8a7115ce3eecbef27ce3b36ad57c590d49c448a8f62" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2021-12-03 16:42.07 ---> using "6ff696b0fce120bd80d73dc055775d9b6cd971171da508a2aeef8fc7d75ea210" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '4.13' '4.13.1'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.13.1"} | "ocaml-system" {= "4.13.1"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> installed ocaml-options-vanilla.1
-> retrieved ocaml-base-compiler.4.13.1 (cached)
-> installed ocaml-base-compiler.4.13.1
-> installed ocaml-config.2
-> installed ocaml.4.13.1
Done.
# Run eval $(opam env --switch=4.13) to update the current shell environment
2021-12-03 16:42.07 ---> using "5b851e796ef60e7ebc00b701b7b91b2ab53d528a80d009ca0f3ff4c7675d2127" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [165 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2021-12-03-0207.34-F-2021-11-23-2001.32.pdiff [559 kB]
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2021-12-03-0207.34-F-2021-11-23-2001.32.pdiff [559 kB]
- Fetched 787 kB in 2s (451 kB/s)
- Reading package lists...
-
2021-12-03 16:42.07 ---> using "5befe0f19a1fd66d536c26354465af9baf75b27978025463558378db01a8ff58" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"orrandomForest.2.0.1\"\
\nopam install -vy \"orrandomForest.2.0.1\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"orrandomForest.2.0.1\" | grep -q '\"debian-unstable\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
Nothing to do.
[NOTE] orrandomForest.2.0.1 is not installed.
The following actions will be performed:
- install conf-r 1.0.0 [required by orrandomForest]
- install dune 2.9.1 [required by orrandomForest]
- install dolog 4.0.0 [required by orrandomForest]
- install orrandomForest 2.0.1
===== 4 to install =====
The following system packages will first need to be installed:
r-base-core
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "r-base-core"
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- Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target.
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service.
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- Setting up dconf-service (0.40.0-2) ...
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- Setting up x11-xserver-utils (7.7+9) ...
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- Setting up r-cran-codetools (0.2-18-1) ...
- Setting up r-cran-boot (1.3-28-2) ...
- Setting up r-base-dev (4.1.2-1) ...
- Setting up dconf-gsettings-backend:amd64 (0.40.0-2) ...
- Setting up r-cran-spatial (7.3-14-2) ...
- Setting up r-cran-mass (7.3-54-2) ...
- Setting up r-cran-foreign (0.8.81-1) ...
- Setting up r-cran-matrix (1.3-4-2) ...
- Setting up r-cran-kernsmooth (2.23-20-1) ...
- Setting up r-cran-mgcv (1.8-38-1) ...
- Setting up libgtk-3-common (3.24.30-4) ...
- Setting up r-cran-class (7.3-19-2) ...
- Setting up libgtk-3-0:amd64 (3.24.30-4) ...
- Setting up r-cran-survival (3.2-13-1) ...
- Setting up libgtk-3-bin (3.24.30-4) ...
- Setting up libvte-2.91-0:amd64 (0.66.1-1) ...
- Setting up r-cran-rpart (4.1-15-2+b1) ...
- Setting up termit (3.1-1) ...
- update-alternatives: using /usr/bin/termit to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- Setting up r-recommended (4.1.2-1) ...
- Setting up liblwp-protocol-https-perl (6.10-1) ...
- Setting up libwww-perl (6.58-1) ...
- Setting up libxml-parser-perl:amd64 (2.46-3) ...
- Setting up libxml-twig-perl (1:3.52-1) ...
- Setting up libnet-dbus-perl (1.2.0-1+b1) ...
- Processing triggers for libc-bin (2.32-4) ...
- Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.6+dfsg-2) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 2/12:
Processing 3/12:
Processing 4/12:
Processing 5/12: [conf-r: R CMD]
-> retrieved dolog.4.0.0 (cached)
-> retrieved dune.2.9.1 (cached)
Processing 6/12: [conf-r: R CMD] [dune: ocaml bootstrap.ml]
-> retrieved orrandomForest.2.0.1 (cached)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "R" "CMD" "BATCH" "check.r" (CWD=/home/opam/.opam/4.13/.opam-switch/build/conf-r.1.0.0)
-> compiled conf-r.1.0.0
Processing 6/12: [dune: ocaml bootstrap.ml]
-> installed conf-r.1.0.0
Processing 7/12: [dune: ocaml bootstrap.ml]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "ocaml" "bootstrap.ml" "-j" "31" (CWD=/home/opam/.opam/4.13/.opam-switch/build/dune.2.9.1)
- File "./bootstrap.ml", line 46, characters 17-27:
- 46 | && String.sub fn 0 (String.length duneboot) = duneboot
- ^^^^^^^^^^
- Warning 6 [labels-omitted]: labels pos, len were omitted in the application of this function.
- File "./bootstrap.ml", line 103, characters 28-37:
- 103 | let args = Array.to_list (Array.sub Sys.argv 1 (Array.length Sys.argv - 1)) in
- ^^^^^^^^^
- Warning 6 [labels-omitted]: labels pos, len were omitted in the application of this function.
- ocamlc -output-complete-exe -w -24 -g -o .duneboot.exe -I boot unix.cma boot/libs.ml boot/duneboot.ml
- ./.duneboot.exe -j 31
- cd _boot && /home/opam/.opam/4.13/bin/ocamlopt.opt -c -g -no-alias-deps -w -49 -I +threads cmdliner_base.ml
- File "vendor/cmdliner/src/cmdliner_base.ml", line 158, characters 14-27:
- Warning 6 [labels-omitted]: labels kind, ambs were omitted in the application of this function.
- cd _boot && /home/opam/.opam/4.13/bin/ocamlopt.opt -c -g -no-alias-deps -w -49 -I +threads cmdliner_docgen.ml
- File "vendor/cmdliner/src/cmdliner_docgen.ml", line 278, characters 23-39:
- Warning 6 [labels-omitted]: label sec was omitted in the application of this function.
- File "vendor/cmdliner/src/cmdliner_docgen.ml", line 293, characters 22-56:
- Warning 6 [labels-omitted]: label sec was omitted in the application of this function.
- File "vendor/cmdliner/src/cmdliner_docgen.ml", line 294, characters 35-51:
- Warning 6 [labels-omitted]: label sec was omitted in the application of this function.
- File "vendor/cmdliner/src/cmdliner_docgen.ml", line 295, characters 36-52:
- Warning 6 [labels-omitted]: label sec was omitted in the application of this function.
- cd _boot && /home/opam/.opam/4.13/bin/ocamlopt.opt -c -g -no-alias-deps -w -49 -I +threads cmdliner_cline.ml
- File "vendor/cmdliner/src/cmdliner_cline.ml", line 128, characters 20-47:
- Warning 6 [labels-omitted]: labels kind, ambs were omitted in the application of this function.
- cd _boot && /home/opam/.opam/4.13/bin/ocamlopt.opt -c -g -no-alias-deps -w -49 -I +threads cmdliner_arg.ml
- File "vendor/cmdliner/src/cmdliner_arg.ml", line 193, characters 24-50:
- Warning 6 [labels-omitted]: label err was omitted in the application of this function.
- File "vendor/cmdliner/src/cmdliner_arg.ml", line 243, characters 24-50:
- Warning 6 [labels-omitted]: label err was omitted in the application of this function.
- File "vendor/cmdliner/src/cmdliner_arg.ml", line 260, characters 10-36:
- Warning 6 [labels-omitted]: label pos was omitted in the application of this function.
- cd _boot && /home/opam/.opam/4.13/bin/ocamlopt.opt -c -g -no-alias-deps -w -49 -I +threads cmdliner.ml
- File "vendor/cmdliner/src/cmdliner.ml", line 195, characters 25-47:
- Warning 6 [labels-omitted]: label errs was omitted in the application of this function.
-
Processing 7/12: [dune: ./dune.exe build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./dune.exe" "build" "-p" "dune" "--profile" "dune-bootstrap" "-j" "31" (CWD=/home/opam/.opam/4.13/.opam-switch/build/dune.2.9.1)
-> compiled dune.2.9.1
-> installed dune.2.9.1
Processing 9/12: [dolog: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "dolog" "-j" "31" (CWD=/home/opam/.opam/4.13/.opam-switch/build/dolog.4.0.0)
-> compiled dolog.4.0.0
-> installed dolog.4.0.0
Processing 11/12: [orrandomForest: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "orrandomForest" "-j" "31" (CWD=/home/opam/.opam/4.13/.opam-switch/build/orrandomForest.2.0.1)
-> compiled orrandomForest.2.0.1
Processing 12/12: [orrandomForest: R CMD]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "R" "CMD" "BATCH" "install_randomForest.r" (CWD=/home/opam/.opam/4.13/.opam-switch/build/orrandomForest.2.0.1)
[ERROR] The installation of orrandomForest failed at "R CMD BATCH install_randomForest.r".
#=== ERROR while installing orrandomForest.2.0.1 ==============================#
# context 2.1.1 | linux/x86_64 | ocaml-base-compiler.4.13.1 | file:///home/opam/opam-repository
# path ~/.opam/4.13/.opam-switch/build/orrandomForest.2.0.1
# command ~/.opam/opam-init/hooks/sandbox.sh install R CMD BATCH install_randomForest.r
# exit-code 1
# env-file ~/.opam/log/orrandomForest-19-0a2807.env
# output-file ~/.opam/log/orrandomForest-19-0a2807.out
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - install orrandomForest 2.0.1
+-
+- The following changes have been performed
| - install conf-r 1.0.0
| - install dolog 4.0.0
| - install dune 2.9.1
+-
<><> orrandomForest.2.0.1 troubleshooting <><><><><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('randomForest', repos='http://cran.r-project.org')
# Run eval $(opam env) to update the current shell environment
The former state can be restored with:
/usr/bin/opam switch import "/home/opam/.opam/4.13/.opam-switch/backup/state-20211203164215.export"
'opam install -vy orrandomForest.2.0.1' failed.
This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.
"/bin/bash" "-c"
"
opam remove -y "orrandomForest.2.0.1"
opam install -vy "orrandomForest.2.0.1"
res=$?
if [ $res = 31 ]; then
if opam show -f x-ci-accept-failures: "orrandomForest.2.0.1" | grep -q '"debian-unstable"'; then
echo "This package failed and has been disabled for CI using the 'x-ci-accept-failures' field."
exit 69
fi
fi
exit $res
" failed with exit status 69
Failed: Build failed
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