Building on clete.ocamllabs.io
(from ocaml/opam:debian-unstable)
WARNING: Error loading config file: .dockercfg: $HOME is not defined
2021-12-03 06:11.28 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
2021-12-03 06:11.28 ---> using "4d29eb3e0b7cd69a97ed90837671d5ca38aa41e2fb94346298af500378eca6fa" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q b1ed080260d9fb3332ffd1ed74a70b40f8d46d66"))
2021-12-03 06:11.28 ---> using "470a5139cd314c308ef6f8a7115ce3eecbef27ce3b36ad57c590d49c448a8f62" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2021-12-03 06:11.28 ---> using "6ff696b0fce120bd80d73dc055775d9b6cd971171da508a2aeef8fc7d75ea210" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=default '4.04' '4.04.2'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.04.2"} | "ocaml-system" {= "4.04.2"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> retrieved ocaml-base-compiler.4.04.2 (cached)
-> installed ocaml-base-compiler.4.04.2
-> installed ocaml-config.1
-> installed ocaml.4.04.2
Done.
# Run eval $(opam env --switch=4.04) to update the current shell environment
2021-12-03 06:11.28 ---> using "cea894a1449c8536943f0db675a5478e530f8f10d3bcbab670b89b12ae1fdd40" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [165 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Ign:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [8877 kB]
- Fetched 9106 kB in 2s (5213 kB/s)
- Reading package lists...
-
2021-12-03 06:11.28 ---> using "50c3aca3e2476747fabc64e632a2c12c03888de0fdcefe45d5f5bc8fc9c135d3" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam install -y ocaml-secondary-compiler"))
The following actions will be performed:
- install ocaml-secondary-compiler 4.08.1-1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-secondary-compiler.4.08.1-1 (cached)
-> installed ocaml-secondary-compiler.4.08.1-1
Done.
# Run eval $(opam env) to update the current shell environment
2021-12-03 06:11.28 ---> using "0ec34243a388c70c39fb3e8c96da8f34e582c56dc9255a65c3d6079206c731ef" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"conf-r.1.0.0\"\
\nopam install -vy \"conf-r.1.0.0\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"conf-r.1.0.0\" | grep -q '\"debian-unstable\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
[NOTE] conf-r.1.0.0 is not installed.
Nothing to do.
The following actions will be performed:
- remove ocaml-secondary-compiler 4.08.1-1
- install conf-r 1.0.0
===== 1 to install | 1 to remove =====
The following system packages will first need to be installed:
r-base-core
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "r-base-core"
- debconf: delaying package configuration, since apt-utils is not installed
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- Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service.
- Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target.
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service.
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- Setting up hicolor-icon-theme (0.17-2) ...
- Setting up libfont-afm-perl (1.20-3) ...
- Setting up libvte-2.91-common (0.66.1-1) ...
- Setting up libicu67:amd64 (67.1-7) ...
- Setting up libdatrie1:amd64 (0.2.13-2) ...
- Setting up xdg-user-dirs (0.17-2) ...
- Setting up libpng-tools (1.6.37-3) ...
- Setting up libxcb-render0:amd64 (1.14-3) ...
- Setting up libclone-perl (0.45-1+b1) ...
- Setting up libglvnd0:amd64 (1.3.4-2+b1) ...
- Setting up libio-stringy-perl (2.111-3) ...
- Setting up libhtml-tagset-perl (3.20-4) ...
- Setting up libauthen-sasl-perl (2.1600-1.1) ...
- Setting up libxcb-glx0:amd64 (1.14-3) ...
- Setting up liblwp-mediatypes-perl (6.04-1) ...
- Setting up libgdk-pixbuf2.0-common (2.42.6+dfsg-2) ...
- Setting up libxcb-shape0:amd64 (1.14-3) ...
- Setting up binutils-common:amd64 (2.37-10) ...
- Setting up x11-common (1:7.7+23) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of restart.
- Setting up libtry-tiny-perl (0.31-1) ...
- Setting up libsensors-config (1:3.6.0-7) ...
- Setting up perl-openssl-defaults:amd64 (5) ...
- Setting up libctf-nobfd0:amd64 (2.37-10) ...
- Setting up libnss-systemd:amd64 (249.7-1) ...
- First installation detected...
- Checking NSS setup...
- Setting up xkb-data (2.33-1) ...
- Setting up libencode-locale-perl (1.05-1.1) ...
- Setting up libxcb-shm0:amd64 (1.14-3) ...
- Setting up libpaper-utils (1.1.28+b1) ...
- Setting up libgomp1:amd64 (11.2.0-12) ...
- Setting up libpcre2-16-0:amd64 (10.39-3) ...
- Setting up libasan6:amd64 (11.2.0-12) ...
- Setting up libxcb-present0:amd64 (1.14-3) ...
- Setting up zip (3.0-12) ...
- Setting up libfontenc1:amd64 (1:1.1.4-1) ...
- Setting up libz3-4:amd64 (4.8.12-1+b1) ...
- Setting up libpcre2-32-0:amd64 (10.39-3) ...
- Setting up libblas3:amd64 (3.10.0-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.70.1-1) ...
- Setting up rpcsvc-proto (1.4.2-4) ...
- Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ...
- Setting up libdata-dump-perl (1.25-1) ...
- Setting up libepoxy0:amd64 (1.5.9-2) ...
- Setting up libxcb-sync1:amd64 (1.14-3) ...
- Setting up libipc-system-simple-perl (1.30-1) ...
- Setting up libxml-xpathengine-perl (0.14-1) ...
- Setting up libavahi-common-data:amd64 (0.8-5) ...
- Setting up libncurses6:amd64 (6.3-1) ...
- Setting up libdbus-1-3:amd64 (1.12.20-3) ...
- Setting up libfribidi0:amd64 (1.0.8-2) ...
- Setting up libquadmath0:amd64 (11.2.0-12) ...
- Setting up libpcre32-3:amd64 (2:8.39-13) ...
- Setting up systemd-timesyncd (249.7-1) ...
- Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service → /lib/systemd/system/systemd-timesyncd.service.
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service.
- Setting up libatomic1:amd64 (11.2.0-12) ...
- Setting up libio-html-perl (1.004-2) ...
- Setting up libtcl8.6:amd64 (8.6.12+dfsg-1) ...
- Setting up icu-devtools (67.1-7) ...
- Setting up libsensors5:amd64 (1:3.6.0-7) ...
- Setting up libncursesw6:amd64 (6.3-1) ...
- Setting up libglapi-mesa:amd64 (21.2.6-1) ...
- Setting up libgfortran5:amd64 (11.2.0-12) ...
- Setting up libvulkan1:amd64 (1.2.189.0-2) ...
- Setting up libtimedate-perl (2.3300-2) ...
- Setting up liblzma-dev:amd64 (5.2.5-2) ...
- Setting up libubsan1:amd64 (11.2.0-12) ...
- Setting up libxcb-dri2-0:amd64 (1.14-3) ...
- Setting up libatk1.0-data (2.36.0-2) ...
- Setting up libffi8:amd64 (3.4.2-3) ...
- Setting up libpcre2-posix3:amd64 (10.39-3) ...
- Setting up libxshmfence1:amd64 (1.3-1) ...
- Setting up libxcb-randr0:amd64 (1.14-3) ...
- Setting up cpp (4:11.2.0-2) ...
- Setting up dbus-session-bus-common (1.12.20-3) ...
- Setting up liblua5.3-0:amd64 (5.3.6-1) ...
- Setting up libx11-6:amd64 (2:1.7.2-2+b1) ...
- Setting up libthai-data (0.1.28-4.1) ...
- Setting up libwayland-egl1:amd64 (1.19.0-2+b1) ...
- Setting up libxss1:amd64 (1:1.2.3-1) ...
- Setting up libxkbfile1:amd64 (1:1.1.0-1) ...
- Setting up libbinutils:amd64 (2.37-10) ...
- Setting up dbus-system-bus-common (1.12.20-3) ...
- Setting up libc-dev-bin (2.32-4) ...
- Setting up libdrm-common (2.4.108-1) ...
- Setting up libelf1:amd64 (0.186-1) ...
- Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
- Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ...
- Setting up xdg-utils (1.1.3-4.1) ...
- update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
- Setting up libcc1-0:amd64 (11.2.0-12) ...
- Setting up liburi-perl (5.10-1) ...
- Setting up dbus-bin (1.12.20-3) ...
- Setting up libx11-protocol-perl (0.56-7.1) ...
- Setting up liblsan0:amd64 (11.2.0-12) ...
- Setting up libblas-dev:amd64 (3.10.0-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up libitm1:amd64 (11.2.0-12) ...
- Setting up libtsan0:amd64 (11.2.0-12) ...
- Setting up libxkbcommon0:amd64 (1.3.1-1) ...
- Setting up libwayland-client0:amd64 (1.19.0-2+b1) ...
- Setting up libctf0:amd64 (2.37-10) ...
- Setting up libnet-ssleay-perl:amd64 (1.90-1) ...
- Setting up libx11-xcb1:amd64 (2:1.7.2-2+b1) ...
- Setting up libice6:amd64 (2:1.0.10-1) ...
- Setting up libhttp-date-perl (6.05-1) ...
- Setting up liblapack3:amd64 (3.10.0-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libfile-basedir-perl (0.09-1) ...
- Setting up libxdamage1:amd64 (1:1.1.5-2) ...
- Setting up libfile-listing-perl (6.14-1) ...
- Setting up libxi6:amd64 (2:1.8-1) ...
- Setting up libxrender1:amd64 (1:0.9.10-1) ...
- Setting up libglib2.0-0:amd64 (2.70.1-1) ...
- Setting up libxtst6:amd64 (2:1.2.3-1) ...
- Setting up libavahi-common3:amd64 (0.8-5) ...
- Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ...
- Setting up libx11-dev:amd64 (2:1.7.2-2+b1) ...
- Setting up libnet-http-perl (6.21-1) ...
- Setting up dbus-daemon (1.12.20-3) ...
- Setting up libatspi2.0-0:amd64 (2.42.0-2) ...
- Setting up libcairo2:amd64 (1.16.0-5) ...
- Setting up libcolord2:amd64 (1.4.5-3) ...
- Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ...
- Setting up libdconf1:amd64 (0.40.0-2) ...
- Setting up libthai0:amd64 (0.1.28-4.1) ...
- Setting up libxfixes3:amd64 (1:5.0.3-2) ...
- Setting up libllvm12:amd64 (1:12.0.1-17) ...
- Setting up dbus (1.12.20-3) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up shared-mime-info (2.0-1) ...
- Setting up libxinerama1:amd64 (2:1.1.4-2) ...
- Setting up libxv1:amd64 (2:1.0.11-1) ...
- Setting up liblapack-dev:amd64 (3.10.0-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up libxrandr2:amd64 (2:1.5.2-1) ...
- Setting up pkg-config (0.29.2-1) ...
- Setting up libfile-desktopentry-perl (0.22-2) ...
- Setting up libwww-robotrules-perl (6.02-1) ...
- Setting up libgcc-11-dev:amd64 (11.2.0-12) ...
- Setting up libdrm2:amd64 (2.4.108-1) ...
- Setting up at-spi2-core (2.42.0-2) ...
- Setting up libwayland-cursor0:amd64 (1.19.0-2+b1) ...
- Setting up libhtml-parser-perl:amd64 (3.76-1) ...
- Setting up libpam-systemd:amd64 (249.7-1) ...
- Setting up libc6-dev:amd64 (2.32-4) ...
- Setting up libharfbuzz0b:amd64 (2.7.4-1) ...
- Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.6+dfsg-2) ...
- Setting up libcairo-gobject2:amd64 (1.16.0-5) ...
- Setting up libatk1.0-0:amd64 (2.36.0-2) ...
- Setting up libsm6:amd64 (2:1.2.3-1) ...
- Setting up libicu-dev:amd64 (67.1-7) ...
- Setting up libavahi-client3:amd64 (0.8-5) ...
- Setting up libio-socket-ssl-perl (2.072-1) ...
- Setting up libhttp-message-perl (6.35-1) ...
- Setting up binutils-x86-64-linux-gnu (2.37-10) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.108-1) ...
- Setting up libhtml-form-perl (6.07-1) ...
- Setting up libbz2-dev:amd64 (1.0.8-4) ...
- Setting up mesa-vulkan-drivers:amd64 (21.2.6-1) ...
- Setting up libfile-mimeinfo-perl (0.30-1) ...
- Setting up gtk-update-icon-cache (3.24.30-4) ...
- Setting up libhttp-negotiate-perl (6.01-1) ...
- Setting up libxft2:amd64 (2.3.2-2) ...
- Setting up libncurses-dev:amd64 (6.3-1) ...
- Setting up libdrm-nouveau2:amd64 (2.4.108-1) ...
- Setting up libpcre2-dev:amd64 (10.39-3) ...
- Setting up libhttp-cookies-perl (6.10-1) ...
- Setting up libpcre3-dev:amd64 (2:8.39-13) ...
- Setting up libgfortran-11-dev:amd64 (11.2.0-12) ...
- Setting up libdrm-radeon1:amd64 (2.4.108-1) ...
- Setting up libhtml-tree-perl (5.07-2) ...
- Setting up libtk8.6:amd64 (8.6.12-1) ...
- Setting up libxcursor1:amd64 (1:1.2.0-2) ...
- Setting up libpango-1.0-0:amd64 (1.48.10+ds1-1) ...
- Setting up libdrm-intel1:amd64 (2.4.108-1) ...
- Setting up libgl1-mesa-dri:amd64 (21.2.6-1) ...
- Setting up libhtml-format-perl (2.12-1.1) ...
- Setting up binutils (2.37-10) ...
- Setting up libreadline-dev:amd64 (8.1-2) ...
- Setting up libatk-bridge2.0-0:amd64 (2.38.0-2) ...
- Setting up dbus-user-session (1.12.20-3) ...
- Setting up libnet-smtp-ssl-perl (1.04-1) ...
- Setting up adwaita-icon-theme (41.0-1) ...
- update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
- Setting up libjpeg62-turbo-dev:amd64 (1:2.1.2-1) ...
- Setting up libmailtools-perl (2.21-1) ...
- Setting up libxt6:amd64 (1:1.2.0-1) ...
- Setting up libstdc++-11-dev:amd64 (11.2.0-12) ...
- Setting up libcups2:amd64 (2.3.3op2-7) ...
- Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ...
- Setting up libhttp-daemon-perl (6.12-1) ...
- Setting up gcc-11 (11.2.0-12) ...
- Setting up libgdk-pixbuf2.0-bin (2.42.6+dfsg-2) ...
- Setting up libncurses5-dev:amd64 (6.3-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.48.10+ds1-1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.48.10+ds1-1) ...
- Setting up libxmu6:amd64 (2:1.1.2-2+b3) ...
- Setting up libglx-mesa0:amd64 (21.2.6-1) ...
- Setting up libglx0:amd64 (1.3.4-2+b1) ...
- Setting up g++-11 (11.2.0-12) ...
- Setting up libpng-dev:amd64 (1.6.37-3) ...
- Setting up libjpeg-dev:amd64 (1:2.1.2-1) ...
- Setting up dconf-service (0.40.0-2) ...
- Setting up libxaw7:amd64 (2:1.0.13-1.1) ...
- Setting up x11-xserver-utils (7.7+9) ...
- Setting up gcc (4:11.2.0-2) ...
- Setting up librsvg2-2:amd64 (2.50.7+dfsg-2) ...
- Setting up libgl1:amd64 (1.3.4-2+b1) ...
- Setting up r-base-core (4.1.2-1) ...
-
- Creating config file /etc/R/Renviron with new version
- Setting up librsvg2-common:amd64 (2.50.7+dfsg-2) ...
- Setting up r-cran-lattice (0.20-45-1) ...
- Setting up r-cran-nlme (3.1.153-1) ...
- Setting up gfortran-11 (11.2.0-12) ...
- Setting up g++ (4:11.2.0-2) ...
- Setting up r-cran-cluster (2.1.2-2) ...
- Setting up x11-utils (7.7+5) ...
- Setting up r-cran-nnet (7.3-16-2) ...
- Setting up r-cran-codetools (0.2-18-1) ...
- Setting up r-cran-boot (1.3-28-2) ...
- Setting up dconf-gsettings-backend:amd64 (0.40.0-2) ...
- Setting up r-cran-spatial (7.3-14-2) ...
- Setting up r-cran-mass (7.3-54-2) ...
- Setting up r-cran-foreign (0.8.81-1) ...
- Setting up gfortran (4:11.2.0-2) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- Setting up r-cran-matrix (1.3-4-2) ...
- Setting up r-cran-kernsmooth (2.23-20-1) ...
- Setting up r-cran-mgcv (1.8-38-1) ...
- Setting up libgtk-3-common (3.24.30-4) ...
- Setting up r-base-dev (4.1.2-1) ...
- Setting up r-cran-class (7.3-19-2) ...
- Setting up libgtk-3-0:amd64 (3.24.30-4) ...
- Setting up r-cran-survival (3.2-13-1) ...
- Setting up libgtk-3-bin (3.24.30-4) ...
- Setting up libvte-2.91-0:amd64 (0.66.1-1) ...
- Setting up r-cran-rpart (4.1-15-2+b1) ...
- Setting up termit (3.1-1) ...
- update-alternatives: using /usr/bin/termit to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- Setting up r-recommended (4.1.2-1) ...
- Setting up liblwp-protocol-https-perl (6.10-1) ...
- Setting up libwww-perl (6.58-1) ...
- Setting up libxml-parser-perl:amd64 (2.46-3) ...
- Setting up libxml-twig-perl (1:3.52-1) ...
- Setting up libnet-dbus-perl (1.2.0-1+b1) ...
- Processing triggers for libc-bin (2.32-4) ...
- Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.6+dfsg-2) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> removed ocaml-secondary-compiler.4.08.1-1
Processing 3/4: [conf-r: R CMD]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "R" "CMD" "BATCH" "check.r" (CWD=/home/opam/.opam/4.04/.opam-switch/build/conf-r.1.0.0)
-> compiled conf-r.1.0.0
-> installed conf-r.1.0.0
Done.
# Run eval $(opam env) to update the current shell environment
2021-12-03 06:12.39 ---> saved as "2a49ff6d200568987dffd844923d2b42a82370952e6c458a106a417e6850204d"
Job succeeded
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