Building on cree.ocamllabs.io
(from ocaml/opam:debian-unstable)
2021-09-03 15:17.56 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
2021-09-03 15:17.56 ---> using "4d29eb3e0b7cd69a97ed90837671d5ca38aa41e2fb94346298af500378eca6fa" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'git://github.com/ocaml/opam-repository.git' ~/opam-repository && git -C ~/opam-repository checkout -q 8fc7af65ccb8f3b3709bf02b749ac492e6700b59"))
2021-09-03 15:17.56 ---> using "eb095db6df41eeadc708604343f7b0ce0892db9136dac67a38046f57271c5802" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
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/: (run (network host)
(shell "git clone -q 'git://github.com/ocaml/ocaml-beta-repository.git' ~/'beta' && git -C ~/'beta' checkout -q 79aeeadd813bdae424ab53f882f08bee0a4e0b89"))
2021-09-03 15:17.56 ---> using "20d9850dcecd0523d6eddecad814e9bbd93882334348605bfa6e15ffd8f5ced5" from cache
/: (run (shell "opam repository add --dont-select 'beta' ~/'beta'"))
[beta] Initialised
2021-09-03 15:17.56 ---> using "6f8879c5099d2146b69bdcec3874fd111cad6c5c42ac63d5f9aa72a228fd8ee8" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=beta,default 4.02.3"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-base-compiler" {= "4.02.3"} | "ocaml-system" {= "4.02.3"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> retrieved ocaml-base-compiler.4.02.3 (cached)
-> installed ocaml-base-compiler.4.02.3
-> installed ocaml-config.1
-> installed ocaml.4.02.3
-> installed base-ocamlbuild.base
Done.
# Run eval $(opam env --switch=4.02.3) to update the current shell environment
2021-09-03 15:17.56 ---> using "67d4e8cb13690404ffa06df9deabf13a99a448310ed0d3bb9d9a797a8085ad3d" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian unstable InRelease [165 kB]
- Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
- Ign:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index
- Get:3 http://deb.debian.org/debian unstable/main amd64 Packages [8766 kB]
- Fetched 8994 kB in 2s (5416 kB/s)
- Reading package lists...
-
2021-09-03 15:17.56 ---> using "5efce0187fddf192b0f92fb1c042b58ab93c287a7daff4722314dc6eff34f559" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam install -y ocaml-secondary-compiler"))
The following actions will be performed:
- install ocaml-secondary-compiler 4.08.1-1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved ocaml-secondary-compiler.4.08.1-1 (cached)
-> installed ocaml-secondary-compiler.4.08.1-1
Done.
# Run eval $(opam env) to update the current shell environment
2021-09-03 15:17.56 ---> using "41e63ef4215d8dafd1cda36bf29e729af5d46f90a2e5b6986f3318083c054d54" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "\
\nopam remove -y \"conf-rdkit.1\"\
\nopam install -vy \"conf-rdkit.1\"\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: \"conf-rdkit.1\" | grep -q '\"debian-unstable\"'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi\
\n\
\n\
\nexit $res\
\n"))
Nothing to do.
[NOTE] conf-rdkit.1 is not installed.
The following actions will be performed:
- remove ocaml-secondary-compiler 4.08.1-1
- install conf-rdkit 1
===== 1 to install | 1 to remove =====
The following system packages will first need to be installed:
librdkit-dev python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3-rdkit"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpython3.9-minimal:amd64.
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- Preparing to unpack .../libpython3.9-minimal_3.9.7-1_amd64.deb ...
- Unpacking libpython3.9-minimal:amd64 (3.9.7-1) ...
- Selecting previously unselected package python3.9-minimal.
- Preparing to unpack .../python3.9-minimal_3.9.7-1_amd64.deb ...
- Unpacking python3.9-minimal (3.9.7-1) ...
- Setting up libpython3.9-minimal:amd64 (3.9.7-1) ...
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- Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ...
- Unpacking python3-minimal (3.9.2-3) ...
- Selecting previously unselected package media-types.
- Preparing to unpack .../1-media-types_4.0.0_all.deb ...
- Unpacking media-types (4.0.0) ...
- Selecting previously unselected package libmpdec3:amd64.
- Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ...
- Unpacking libmpdec3:amd64 (2.5.1-2) ...
- Selecting previously unselected package libpython3.9-stdlib:amd64.
- Preparing to unpack .../3-libpython3.9-stdlib_3.9.7-1_amd64.deb ...
- Unpacking libpython3.9-stdlib:amd64 (3.9.7-1) ...
- Selecting previously unselected package python3.9.
- Preparing to unpack .../4-python3.9_3.9.7-1_amd64.deb ...
- Unpacking python3.9 (3.9.7-1) ...
- Selecting previously unselected package libpython3-stdlib:amd64.
- Preparing to unpack .../5-libpython3-stdlib_3.9.2-3_amd64.deb ...
- Unpacking libpython3-stdlib:amd64 (3.9.2-3) ...
- Setting up python3-minimal (3.9.2-3) ...
- Selecting previously unselected package python3.
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- Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ...
- Unpacking python3 (3.9.2-3) ...
- Selecting previously unselected package gcc-11-base:amd64.
- Preparing to unpack .../01-gcc-11-base_11.2.0-3_amd64.deb ...
- Unpacking gcc-11-base:amd64 (11.2.0-3) ...
- Selecting previously unselected package fonts-freefont-ttf.
- Preparing to unpack .../02-fonts-freefont-ttf_20120503-10_all.deb ...
- Unpacking fonts-freefont-ttf (20120503-10) ...
- Selecting previously unselected package libblas3:amd64.
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- Selecting previously unselected package libboost-iostreams1.74.0:amd64.
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- Unpacking libboost-iostreams1.74.0:amd64 (1.74.0-9) ...
- Selecting previously unselected package libboost-python1.74.0.
- Preparing to unpack .../05-libboost-python1.74.0_1.74.0-9_amd64.deb ...
- Unpacking libboost-python1.74.0 (1.74.0-9) ...
- Selecting previously unselected package libboost-serialization1.74.0:amd64.
- Preparing to unpack .../06-libboost-serialization1.74.0_1.74.0-9_amd64.deb ...
- Unpacking libboost-serialization1.74.0:amd64 (1.74.0-9) ...
- Selecting previously unselected package libcoordgen2:amd64.
- Preparing to unpack .../07-libcoordgen2_2.0.3-1_amd64.deb ...
- Unpacking libcoordgen2:amd64 (2.0.3-1) ...
- Selecting previously unselected package libgfortran5:amd64.
- Preparing to unpack .../08-libgfortran5_11.2.0-3_amd64.deb ...
- Unpacking libgfortran5:amd64 (11.2.0-3) ...
- Selecting previously unselected package liblapack3:amd64.
- Preparing to unpack .../09-liblapack3_3.10.0-1_amd64.deb ...
- Unpacking liblapack3:amd64 (3.10.0-1) ...
- Selecting previously unselected package libmaeparser1:amd64.
- Preparing to unpack .../10-libmaeparser1_1.2.4-1+b1_amd64.deb ...
- Unpacking libmaeparser1:amd64 (1.2.4-1+b1) ...
- Selecting previously unselected package libpython3.9:amd64.
- Preparing to unpack .../11-libpython3.9_3.9.7-1_amd64.deb ...
- Unpacking libpython3.9:amd64 (3.9.7-1) ...
- Selecting previously unselected package librdkit1.
- Preparing to unpack .../12-librdkit1_202009.5-1+b1_amd64.deb ...
- Unpacking librdkit1 (202009.5-1+b1) ...
- Selecting previously unselected package librdkit-dev.
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- Unpacking librdkit-dev (202009.5-1+b1) ...
- Selecting previously unselected package python3-pkg-resources.
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- Unpacking python3-pkg-resources (52.0.0-4) ...
- Selecting previously unselected package python3-numpy.
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- Unpacking python3-numpy (1:1.19.5-1) ...
- Selecting previously unselected package rdkit-data.
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- Unpacking rdkit-data (202009.5-1) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../17-python3-rdkit_202009.5-1+b1_amd64.deb ...
- Unpacking python3-rdkit (202009.5-1+b1) ...
- Setting up media-types (4.0.0) ...
- Setting up gcc-11-base:amd64 (11.2.0-3) ...
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0-9) ...
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up rdkit-data (202009.5-1) ...
- Setting up libmaeparser1:amd64 (1.2.4-1+b1) ...
- Setting up libblas3:amd64 (3.10.0-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libgfortran5:amd64 (11.2.0-3) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ...
- Setting up libmpdec3:amd64 (2.5.1-2) ...
- Setting up libboost-python1.74.0 (1.74.0-9) ...
- Setting up libcoordgen2:amd64 (2.0.3-1) ...
- Setting up libpython3.9-stdlib:amd64 (3.9.7-1) ...
- Setting up libpython3-stdlib:amd64 (3.9.2-3) ...
- Setting up liblapack3:amd64 (3.10.0-1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpython3.9:amd64 (3.9.7-1) ...
- Setting up python3.9 (3.9.7-1) ...
- Setting up librdkit1 (202009.5-1+b1) ...
- Setting up python3 (3.9.2-3) ...
- running python rtupdate hooks for python3.9...
- running python post-rtupdate hooks for python3.9...
- Setting up librdkit-dev (202009.5-1+b1) ...
- Setting up python3-pkg-resources (52.0.0-4) ...
- Setting up python3-numpy (1:1.19.5-1) ...
- Setting up python3-rdkit (202009.5-1+b1) ...
- Processing triggers for libc-bin (2.31-13) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> removed ocaml-secondary-compiler.4.08.1-1
Processing 3/4: [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/4.02.3/.opam-switch/build/conf-rdkit.1)
Processing 3/4: [conf-rdkit: ./test]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./test" (CWD=/home/opam/.opam/4.02.3/.opam-switch/build/conf-rdkit.1)
- 2020.09.5
-> compiled conf-rdkit.1
-> installed conf-rdkit.1
Done.
# Run eval $(opam env) to update the current shell environment
2021-09-03 15:18.24 ---> saved as "f04cdad3338c885a3655b1e7545660dde71f5834e198a46dec32704f402a3c3b"
Job succeeded
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